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map reads to reference tool  (Qiagen)


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    Structured Review

    Qiagen map reads to reference tool
    Map Reads To Reference Tool, supplied by Qiagen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/map+reads+to+the+reference+tool/map+reads+to+reference+tool/pm39758819-789-24-28
    Average 90 stars, based on 1 article reviews
    map reads to reference tool - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    RNA Sequencing:

    Article Title: The arms race of ray-finned fish against the derepression of LTR retroelements
    Article Snippet: To estimate TE transcriptional activity, we first identified TEs in the de novo assembled transcriptomes with RepeatMasker v.4.1.0 via a specific zebrafish TE library downloaded from the FishTEDB database , . .. After TE identification, the trimmed reads related to six different developmental stages and two RNA-seq datasets of 12 hpf zebrafish embryos treated with DMSO and 5Aza-dC were mapped against the reference transcriptome via the proprietary map reads to the reference tool included in the CLC Genomics Workbench v.24.0.1 (Qiagen, Hilden, Germany), with the following mapping parameters: length fraction = 0.80 and similarity fraction = 0.80. .. From the RepeatMasker output file, redundancy was limited by removing the entries not classified as TEs and filtering for the highest score and length value (> 80 bp).



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